FIVEx is a tool for browsing expression and splice QTL (cis-eQTL and cis-sQTL) datasets. It provides a number of tools aimed at functional interpretation. See our preprint for details.
Created by Alan Kwong, Mukai Wang, Peter VandeHaar, Andy Boughton, and Hyun Min Kang. Source code can be found on GitHub.
We present RNA-seq data aggregated, harmonized, and analyzed by the EBI eQTL Catalogue. See their site for more details of contributing studies or to download raw data.
Genome positions use coordinates from human genome build GRCh38.
| Study Name | Cell/Tissue Type | Samples | Donors | Reference |
|---|---|---|---|---|
| Alasoo_2018 | macrophages | 336 | 84 | Alasoo et al. 2018 |
| BLUEPRINT | monocytes, neutrophils, CD4+ T cells | 554 | 197 | Chen et al. 2016 |
| BrainSeq | brain (dorsolateral prefrontal cortex) | 484 | 484 | Jaffe et al. 2018 |
| FUSION | adipose, muscle | 559 | 302 | Taylor et al. 2019 |
| GENCORD | LCLs, fibroblasts, T cells | 560 | 195 | Gutierrez-Arcelus et al. 2013 |
| GEUVADIS | LCLs | 445 | 445 | Lappalainen et al. 2013 |
| GTEx v7 | 49 tissues | 8356 | 507 | The GTEx Consortium 2020 |
| HipSci | iPSCs | 322 | 322 | Kilpinen et al. 2017 |
| Lepik_2017 | blood | 491 | 491 | Lepik et al. 2017 |
| Nedelec_2016 | macrophages | 493 | 168 | Nédélec et al. 2016 |
| Quach_2016 | monocytes | 969 | 200 | Quach et al. 2016 |
| ROSMAP | brain (dorsolateral prefrontal cortex) | 576 | 576 | Ng et al. 2017 |
| Schmiedel_2018 | immune cells | 1331 | 91 | Schmiedel et al. 2018 |
| Schwartzentruber_2018 | sensory neurons | 98 | 98 | Schwartzentruber et al. 2018 |
| TwinsUK | adipose, LCLs, skin, blood | 1364 | 433 | Buil et al. 2015 |
| van_de_Bunt_2015 | pancreatic islets | 117 | 117 | van de Bunt et al. 2015 |